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Species belonging to selected taxon:
Populus trichocarpa
ABOUT THIS RECORD
ID:
MNEST008850
species:
Populus trichocarpa
miRNA family:
MIR482
source:
miRNEST
Taxonomy by NCBI:
Populus trichocarpa
Populus
Saliceae
Salicaceae
Malpighiales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TCTTGCCTACTCCTCCCATT
miRNA*
ATGGGAGAGTATGCAAGAAG
mismatches:
1
bulges:
2
View larger
pre-miRNA
GGCCGGGGGAGGGAAACGGAGAGTCTTAGCAAGTCTTTGGAG
ATGGGAGAGTATGCAAGAAG
GAAAAAATCATGATTTAATATCCCT
TCTTGCCTACTCC
TCCCATT
CCATCTGCTTTCTGCGACTCCTCTCTTTCCTTATTCTAGA
dot-bracket secondary structure
....((((.(((((((.((((((((.(((.((((...((((.
(((((((((((.((((((((
(.....................)))
)))))).)))).)
)))))))
)))...)))).))).)))).)))).))))))).))))...
SIMILARITIES
miRBase
ptc-MIR482
:
2e-46
PMRD
no hits
microPC
miR482
:
2e-34
UniProt
no hits
RFAM
no hits
most similar mature miRNAs
Identical with:
miR482
from microPC (
MNEST046388
)
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction:
true miRNA
Source sequences
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